foldseek-structural-search

Maintained by google-deepmind

Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) and wants to find structurally similar proteins. Do NOT use if the user only provides a protein sequenc

Current version: Unknown
License: Unknown
Network access: Unknown / not assessed
Review status: Not verified

Problem it solves

This catalog entry helps users find and evaluate foldseek-structural-search for the task described by its available catalog summary. Confirm the exact scope in the linked original source when one is available.

When to use it

Consider foldseek-structural-search when its available catalog summary matches the task at hand. When available, review the linked original source before use for precise instructions, requirements, and limitations.

foldseek-structural-search is listed as an agent skill in RefHub. The listed maintainer is google-deepmind. The available catalog summary is: Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) and wants to find structurally similar proteins. Do NOT use if the user only provides a protein sequenc When available, review the linked original source for exact usage instructions, required tools, and limitations.

Installation and updates

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Install command

npx skills add google-deepmind/science-skills --skill foldseek-structural-search -y

Agent compatibility

No compatibility test has been recorded

Do not assume agent compatibility until documented test evidence is available.